PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1832_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 135aa    MW: 15352.4 Da    PI: 10.0987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1832_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.5e-1560109355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+ +++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  RrC1832_p1  60 YRGVTKHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 109
                 9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.40E-2358117No hitNo description
SuperFamilySSF541711.37E-1858118IPR016177DNA-binding domain
SMARTSM003808.7E-3259123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-1959117IPR001471AP2/ERF domain
PROSITE profilePS5103219.12459117IPR001471AP2/ERF domain
PfamPF008474.3E-1060109IPR001471AP2/ERF domain
PRINTSPR003674.2E-56071IPR001471AP2/ERF domain
PRINTSPR003674.2E-599119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
KAARSYDLAA LKYWGPWTTT NFPITNYEKE LEEMKHMTRQ EFVAAIRRKS SGFSRGASMY  60
RGVTKHHQHG RWQARIGRVA GNKDLYLGTF STEEEAAEAY DIAAIKFRGL NAVTNFEMNR  120
YAVKAILESS TLPIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5065491e-146AY506549.1 Arabidopsis thaliana PLETHORA1 (PLT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585217.15e-90PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
RefseqXP_013696137.14e-90PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
SwissprotQ5YGP81e-90PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A078EZK95e-90A0A078EZK9_BRANA; BnaC05g31430D protein
STRINGBra031234.1-P9e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.15e-86AP2 family protein